PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451138.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 272aa    MW: 30948.2 Da    PI: 8.9698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.21.6e-06114133120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C++C+k+F+r  nL+ H+
  XP_016451138.1 114 FSCHICHKTFNRYNNLQMHM 133
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.29E-5109136No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4114133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388114141IPR007087Zinc finger, C2H2
SMARTSM003550.55114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM00355100161193IPR015880Zinc finger, C2H2-like
SMARTSM00355150198218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MERSYMASSS TVENQIEPFD FFAEKTQYAF EFLSLSQSSE KEIRLSNNQE NPNFCNWPEK  60
EDDLTVALHI GLPNFSKAST NILIDHSKGG GNMAAVTQYW IPTPSQILVG FTHFSCHICH  120
KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHPRAKPLK  180
DFRTLQTHYK RKHGTKRFAC RKCGKCLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD  240
HIASFGEGHG PCPPNSFEGV AVQKTGTYSV FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451138.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG31e-110TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLK4BTX01e-158K4BTX0_SOLLC; Uncharacterized protein
STRINGSolyc04g074320.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132641517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-112C2H2 family protein